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Genome Study Reveals Ancient Tomato Hybrid Gave Rise to Modern Potato

The discovery of SP6A and IT1’s role in tuber development opens new pathways to enhance potato resilience.

Overview

  • The study drew on the largest potato genomic dataset to date, analyzing 128 genomes, including 88 haplotype-resolved sequences, to trace hybrid ancestry.
  • SP6A from the tomato lineage functions as a genetic switch to initiate tuber formation while IT1 from Etuberosum regulates the growth of underground stems.
  • Tomatoes and Etuberosum shared a common ancestor about 14 million years ago and interbred 8–9 million years ago to give rise to tuber-forming potatoes.
  • Geological uplift of the Andes during the Miocene created new cold environments that drove selection for tuber development and asexual reproduction via tubers.
  • The study’s genetic roadmap could guide breeding of more resilient potato varieties to strengthen global food security.